diff --git a/src/shell-integration/supported-shells/bash.js b/src/shell-integration/supported-shells/bash.js
index b53d401..35d23c1 100644
--- a/src/shell-integration/supported-shells/bash.js
+++ b/src/shell-integration/supported-shells/bash.js
@@ -27,10 +27,10 @@ function setup(tools) {
   const startupFile = execAndGetOutput(startupFileCommand, executableName);
   teardown();
 
-  for (const tool of tools) {
+  for (const { tool, aikidoCommand } of tools) {
     addLineToFile(
       startupFile,
-      `alias ${tool}="aikido-${tool}" # Safe-chain alias for ${tool}`
+      `alias ${tool}="${aikidoCommand}" # Safe-chain alias for ${tool}`
     );
   }
 
diff --git a/src/shell-integration/supported-shells/bash.spec.js b/src/shell-integration/supported-shells/bash.spec.js
index a7cc1bd..21be84e 100644
--- a/src/shell-integration/supported-shells/bash.spec.js
+++ b/src/shell-integration/supported-shells/bash.spec.js
@@ -60,7 +60,11 @@ describe("Bash shell integration", () => {
 
   describe("setup", () => {
     it("should add aliases for all provided tools", () => {
-      const tools = ["npm", "npx", "yarn"];
+      const tools = [
+        { tool: "npm", aikidoCommand: "aikido-npm" },
+        { tool: "npx", aikidoCommand: "aikido-npx" },
+        { tool: "yarn", aikidoCommand: "aikido-yarn" }
+      ];
 
       const result = bash.setup(tools);
       assert.strictEqual(result, true);
@@ -85,7 +89,7 @@ describe("Bash shell integration", () => {
         "utf-8"
       );
 
-      const tools = ["npm"];
+      const tools = [{ tool: "npm", aikidoCommand: "aikido-npm" }];
       bash.setup(tools);
 
       const content = fs.readFileSync(mockStartupFile, "utf-8");
@@ -171,7 +175,10 @@ describe("Bash shell integration", () => {
 
   describe("integration tests", () => {
     it("should handle complete setup and teardown cycle", () => {
-      const tools = ["npm", "yarn"];
+      const tools = [
+        { tool: "npm", aikidoCommand: "aikido-npm" },
+        { tool: "yarn", aikidoCommand: "aikido-yarn" }
+      ];
 
       // Setup
       bash.setup(tools);
@@ -187,7 +194,7 @@ describe("Bash shell integration", () => {
     });
 
     it("should handle multiple setup calls", () => {
-      const tools = ["npm"];
+      const tools = [{ tool: "npm", aikidoCommand: "aikido-npm" }];
 
       bash.setup(tools);
       bash.setup(tools);
diff --git a/src/shell-integration/supported-shells/fish.js b/src/shell-integration/supported-shells/fish.js
index b8c3bb3..429d351 100644
--- a/src/shell-integration/supported-shells/fish.js
+++ b/src/shell-integration/supported-shells/fish.js
@@ -27,10 +27,10 @@ function setup(tools) {
   const startupFile = execAndGetOutput(startupFileCommand, executableName);
   teardown();
 
-  for (const tool of tools) {
+  for (const { tool, aikidoCommand } of tools) {
     addLineToFile(
       startupFile,
-      `alias ${tool} "aikido-${tool}" # Safe-chain alias for ${tool}`
+      `alias ${tool} "${aikidoCommand}" # Safe-chain alias for ${tool}`
     );
   }
 
diff --git a/src/shell-integration/supported-shells/fish.spec.js b/src/shell-integration/supported-shells/fish.spec.js
index af4834d..15344a3 100644
--- a/src/shell-integration/supported-shells/fish.spec.js
+++ b/src/shell-integration/supported-shells/fish.spec.js
@@ -60,7 +60,11 @@ describe("Fish shell integration", () => {
 
   describe("setup", () => {
     it("should add aliases for all provided tools", () => {
-      const tools = ["npm", "npx", "yarn"];
+      const tools = [
+        { tool: "npm", aikidoCommand: "aikido-npm" },
+        { tool: "npx", aikidoCommand: "aikido-npx" },
+        { tool: "yarn", aikidoCommand: "aikido-yarn" }
+      ];
 
       const result = fish.setup(tools);
       assert.strictEqual(result, true);
@@ -75,7 +79,7 @@ describe("Fish shell integration", () => {
       // Pre-populate file with existing aliases
       fs.writeFileSync(mockStartupFile, 'alias npm "old-npm"\nalias npx "old-npx"\n', "utf-8");
 
-      const tools = ["npm"];
+      const tools = [{ tool: "npm", aikidoCommand: "aikido-npm" }];
       fish.setup(tools);
 
       const content = fs.readFileSync(mockStartupFile, "utf-8");
@@ -161,7 +165,10 @@ describe("Fish shell integration", () => {
 
   describe("integration tests", () => {
     it("should handle complete setup and teardown cycle", () => {
-      const tools = ["npm", "yarn"];
+      const tools = [
+        { tool: "npm", aikidoCommand: "aikido-npm" },
+        { tool: "yarn", aikidoCommand: "aikido-yarn" }
+      ];
 
       // Setup
       fish.setup(tools);
@@ -177,7 +184,7 @@ describe("Fish shell integration", () => {
     });
 
     it("should handle multiple setup calls", () => {
-      const tools = ["npm"];
+      const tools = [{ tool: "npm", aikidoCommand: "aikido-npm" }];
 
       fish.setup(tools);
       fish.setup(tools);
diff --git a/src/shell-integration/supported-shells/zsh.js b/src/shell-integration/supported-shells/zsh.js
index 9943634..d0b179b 100644
--- a/src/shell-integration/supported-shells/zsh.js
+++ b/src/shell-integration/supported-shells/zsh.js
@@ -27,10 +27,10 @@ function setup(tools) {
   const startupFile = execAndGetOutput(startupFileCommand, executableName);
   teardown();
 
-  for (const tool of tools) {
+  for (const { tool, aikidoCommand } of tools) {
     addLineToFile(
       startupFile,
-      `alias ${tool}="aikido-${tool}" # Safe-chain alias for ${tool}`
+      `alias ${tool}="${aikidoCommand}" # Safe-chain alias for ${tool}`
     );
   }
 
diff --git a/src/shell-integration/supported-shells/zsh.spec.js b/src/shell-integration/supported-shells/zsh.spec.js
index 1e2f0bd..37cc20f 100644
--- a/src/shell-integration/supported-shells/zsh.spec.js
+++ b/src/shell-integration/supported-shells/zsh.spec.js
@@ -60,7 +60,11 @@ describe("Zsh shell integration", () => {
 
   describe("setup", () => {
     it("should add aliases for all provided tools", () => {
-      const tools = ["npm", "npx", "yarn"];
+      const tools = [
+        { tool: "npm", aikidoCommand: "aikido-npm" },
+        { tool: "npx", aikidoCommand: "aikido-npx" },
+        { tool: "yarn", aikidoCommand: "aikido-yarn" }
+      ];
 
       const result = zsh.setup(tools);
       assert.strictEqual(result, true);
@@ -85,7 +89,7 @@ describe("Zsh shell integration", () => {
         "utf-8"
       );
 
-      const tools = ["npm"];
+      const tools = [{ tool: "npm", aikidoCommand: "aikido-npm" }];
       zsh.setup(tools);
 
       const content = fs.readFileSync(mockStartupFile, "utf-8");
@@ -171,7 +175,10 @@ describe("Zsh shell integration", () => {
 
   describe("integration tests", () => {
     it("should handle complete setup and teardown cycle", () => {
-      const tools = ["npm", "yarn"];
+      const tools = [
+        { tool: "npm", aikidoCommand: "aikido-npm" },
+        { tool: "yarn", aikidoCommand: "aikido-yarn" }
+      ];
 
       // Setup
       zsh.setup(tools);
@@ -187,7 +194,7 @@ describe("Zsh shell integration", () => {
     });
 
     it("should handle multiple setup calls", () => {
-      const tools = ["npm"];
+      const tools = [{ tool: "npm", aikidoCommand: "aikido-npm" }];
 
       zsh.setup(tools);
       zsh.setup(tools);